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Research Output 1998 2019

  • 3229 Citations
  • 29 h-Index
  • 146 Article
  • 4 Review article
  • 1 Letter
2019
2 Citations (Scopus)

Arenavirus genomics: novel insights into viral diversity, origin, and evolution

Pontremoli, C., Forni, D. & Sironi, M., Feb 1 2019, In : Current Opinion in Virology. 34, p. 18-28 11 p.

Research output: Contribution to journalReview article

Lassa virus
Arenavirus
Genomics
Arenaviridae
Genome

ICTV Virus Taxonomy Profile: Arenaviridae

Radoshitzky, S. R., Buchmeier, M. J., Charrel, R. N., Clegg, J. C. S., Gonzalez, J. P. J., Günther, S., Hepojoki, J., Kuhn, J. H., Lukashevich, I. S., Romanowski, V., Salvato, M. S., Sironi, M., Stenglein, M. D., de la Torre, J. C. & Ictv Report Consortium, R. C., Aug 1 2019, In : The Journal of general virology. 100, 8, p. 1200-1201 2 p.

Research output: Contribution to journalArticle

Arenaviridae
Viruses
Arenavirus
Snakes
Virion

Mode and tempo of human hepatitis virus evolution

Cagliani, R., Forni, D. & Sironi, M., 2019, In : Computational and Structural Biotechnology Journal. 17, p. 1384-1395 12 p.

Research output: Contribution to journalReview article

Open Access
Hepatitis Viruses
Viruses
Hepatitis, Viral, Human
Genes
Hepatitis Delta Virus

Phylogenies in ART: HIV reservoirs, HIV latency and drug resistance

Bandera, A., Gori, A., Clerici, M. & Sironi, M., Apr 25 2019, In : Current Opinion in Pharmacology. 48, p. 24-32 9 p.

Research output: Contribution to journalReview article

Phylogeny
Drug Resistance
HIV
Therapeutics
Mutation
1 Citation (Scopus)

Phylogenies in ART: HIV reservoirs, HIV latency and drug resistance

Bandera, A., Gori, A., Clerici, M. & Sironi, M., Oct 1 2019, In : Current Opinion in Pharmacology. 48, p. 24-32 9 p.

Research output: Contribution to journalReview article

Phylogeny
Drug Resistance
HIV
Therapeutics
Mutation
Human Herpesvirus 3
Viruses
Chickenpox
Herpes Zoster
Phylogeny
13 Citations (Scopus)

Taxonomy of the order Bunyavirales: update 2019

Abudurexiti, A., Adkins, S., Alioto, D., Alkhovsky, S. V., Avšič-Županc, T., Ballinger, M. J., Bente, D. A., Beer, M., Bergeron, É., Blair, C. D., Briese, T., Buchmeier, M. J., Burt, F. J., Calisher, C. H., Cháng, C., Charrel, R. N., Choi, I. R., Clegg, J. C. S., de la Torre, J. C., de Lamballerie, X. & 83 others, Dèng, F., Di Serio, F., Digiaro, M., Drebot, M. A., Duàn, X., Ebihara, H., Elbeaino, T., Ergünay, K., Fulhorst, C. F., Garrison, A. R., Gāo, G. F., Gonzalez, J. P. J., Groschup, M. H., Günther, S., Haenni, A. L., Hall, R. A., Hepojoki, J., Hewson, R., Hú, Z., Hughes, H. R., Jonson, M. G., Junglen, S., Klempa, B., Klingström, J., Kòu, C., Laenen, L., Lambert, A. J., Langevin, S. A., Liu, D., Lukashevich, I. S., Luò, T., Lǚ, C., Maes, P., de Souza, W. M., Marklewitz, M., Martelli, G. P., Matsuno, K., Mielke-Ehret, N., Minutolo, M., Mirazimi, A., Moming, A., Mühlbach, H. P., Naidu, R., Navarro, B., Nunes, M. R. T., Palacios, G., Papa, A., Pauvolid-Corrêa, A., Pawęska, J. T., Qiáo, J., Radoshitzky, S. R., Resende, R. O., Romanowski, V., Sall, A. A., Salvato, M. S., Sasaya, T., Shěn, S., Shí, X., Shirako, Y., Simmonds, P., Sironi, M., Song, J. W., Spengler, J. R., Stenglein, M. D., Sū, Z., Sūn, S., Táng, S., Turina, M., Wáng, B., Wáng, C., Wáng, H., Wáng, J., Wèi, T., Whitfield, A. E., Zerbini, F. M., Zhāng, J., Zhāng, L., Zhāng, Y., Zhang, Y. Z., Zhāng, Y., Zhou, X., Zhū, L. & Kuhn, J. H., Jan 1 2019, In : Archives of Virology. 164, 7, p. 1949-1965

Research output: Contribution to journalArticle

Open Access
Viruses
28 Citations (Scopus)

Taxonomy of the order Bunyavirales: second update 2018

Maes, P., Adkins, S., Alkhovsky, S. V., Avšič-Županc, T., Ballinger, M. J., Bente, D. A., Beer, M., Bergeron, É., Blair, C. D., Briese, T., Buchmeier, M. J., Burt, F. J., Calisher, C. H., Charrel, R. N., Choi, I. R., Clegg, J. C. S., de la Torre, J. C., de Lamballerie, X., DeRisi, J. L., Digiaro, M. & 58 others, Drebot, M., Ebihara, H., Elbeaino, T., Ergünay, K., Fulhorst, C. F., Garrison, A. R., Gāo, G. F., Gonzalez, J. P. J., Groschup, M. H., Günther, S., Haenni, A. L., Hall, R. A., Hewson, R., Hughes, H. R., Jain, R. K., Jonson, M. G., Junglen, S., Klempa, B., Klingström, J., Kormelink, R., Lambert, A. J., Langevin, S. A., Lukashevich, I. S., Marklewitz, M., Martelli, G. P., Mielke-Ehret, N., Mirazimi, A., Mühlbach, H. P., Naidu, R., Nunes, M. R. T., Palacios, G., Papa, A., Pawęska, J. T., Peters, C. J., Plyusnin, A., Radoshitzky, S. R., Resende, R. O., Romanowski, V., Sall, A. A., Salvato, M. S., Sasaya, T., Schmaljohn, C., Shí, X., Shirako, Y., Simmonds, P., Sironi, M., Song, J. W., Spengler, J. R., Stenglein, M. D., Tesh, R. B., Turina, M., Wèi, T., Whitfield, A. E., Yeh, S. D., Zerbini, F. M., Zhang, Y. Z., Zhou, X. & Kuhn, J. H., Jan 1 2019, (Accepted/In press) In : Archives of Virology.

Research output: Contribution to journalArticle

Arenaviridae
Viruses

The chameleonic genetics of Lassa virus

Sironi, M. & de la Torre, J. C., Oct 3 2019, In : The Lancet Infectious Diseases.

Research output: Contribution to journalArticle

JC polyomavirus
JC Virus
human population
Population
virus
2018
2 Citations (Scopus)
genotype
genome
Genotype
Genome
Snakes
5 Citations (Scopus)
Rodentia
virus
rodents
rodent
Viruses
Open Access
Rodentia
virus
rodents
rodent
Viruses
3 Citations (Scopus)

Evolutionary analysis provides insight into the origin and adaptation of HCV

Forni, D., Cagliani, R., Pontremoli, C., Pozzoli, U., Vertemara, J., Gioia, L. D., Clerici, M. & Sironi, M., May 1 2018, In : Frontiers in Microbiology. 9, MAY, 16 p., 854.

Research output: Contribution to journalArticle

Open Access
Hepacivirus
Horses
Genotype
Species Specificity
Equidae

Evolutionary analysis provides insight into the origin and adaptation of HCV

Forni, D., Cagliani, R., Pontremoli, C., Pozzoli, U., Vertemara, J., Gioia, L. D., Clerici, M. & Sironi, M., May 1 2018, In : Frontiers in Microbiology. 9, MAY

Research output: Contribution to journalArticle

Hepacivirus
Horses
Genotype
Species Specificity
Equidae
Telomere
Karyotype
Genes
Meiosis
Telomere-Binding Proteins

Evolutionary rates of mammalian telomere-stability genes correlate with karyotype features and female germline expression

Pontremoli, C., Forni, D., Cagliani, R., Pozzoli, U., Clerici, M. & Sironi, M., Jan 1 2018, In : Nucleic Acids Research. 46, 14, p. 7153-7168 16 p.

Research output: Contribution to journalArticle

Open Access
Telomere
Karyotype
Genes
Meiosis
Telomere-Binding Proteins
Cytoskeletal Proteins
Plasmodium
Parasites
Erythrocytes
Primates
Open Access
Cytoskeletal Proteins
Plasmodium
Parasites
Erythrocytes
Primates
1 Citation (Scopus)

Genetic susceptibility to infectious diseases: Current status and future perspectives from genome-wide approaches

Mozzi, A., Pontremoli, C. & Sironi, M., Jan 1 2018, In : Infection, Genetics and Evolution. 66, p. 286-307 22 p.

Research output: Contribution to journalArticle

Genome-Wide Association Study
infectious disease
Genetic Predisposition to Disease
infectious diseases
Communicable Diseases
2 Citations (Scopus)

Multiple selected changes may modulate the molecular interaction between Laverania RH5 and primate basigin

Forni, D., Pontremoli, C., Cagliani, R., Pozzoli, U., Clerici, M. & Sironi, M., May 1 2018, In : mBio. 9, 3, e00476-18.

Research output: Contribution to journalLetter

Open Access

Origin and dispersal of Hepatitis e virus article

Forni, D., Cagliani, R., Clerici, M. & Sironi, M., Dec 1 2018, In : Emerging Microbes and Infections. 7, 1

Research output: Contribution to journalArticle

Hepatitis Viruses
Camelus
Genotype
Rabbits
Hepatitis E virus
17 Citations (Scopus)

Origin and dispersal of Hepatitis e virus article

Forni, D., Cagliani, R., Clerici, M. & Sironi, M., Dec 1 2018, In : Emerging Microbes and Infections. 7, 1, 13 p., 11.

Research output: Contribution to journalArticle

Open Access
Hepatitis Viruses
Camelus
Genotype
Rabbits
Hepatitis E virus
4 Citations (Scopus)

Strategy of Human Cytomegalovirus To Escape Interferon Beta-Induced APOBEC3G Editing Activity

Pautasso, S., Galitska, G., Dell'Oste, V., Biolatti, M., Cagliani, R., Forni, D., De Andrea, M., Gariglio, M., Sironi, M. & Landolfo, S., Oct 1 2018, In : Journal of Virology. 92, 19, 15 p., e01224-18.

Research output: Contribution to journalArticle

Human herpesvirus 5
interferon-beta
Interferon-beta
Cytomegalovirus
apolipoprotein B
Heme
Hemopexin
Hemoglobins
Iron
Trypanosoma brucei brucei
Open Access
Heme
Hemopexin
Hemoglobins
Iron
Trypanosoma brucei brucei
2 Citations (Scopus)

The influence of DCDC2 risk genetic variants on reading: Testing main and haplotypic effects

Riva, V., Mozzi, A., Forni, D., Trezzi, V., Giorda, R., Riva, S., Villa, M., Sironi, M., Cagliani, R. & Mascheretti, S., Jan 1 2018, In : Neuropsychologia. 7 p.

Research output: Contribution to journalArticle

Reading
Dyslexia
Aptitude
Haplotypes
Nuclear Family
2017
4 Citations (Scopus)

A 6-amino acid insertion/deletion polymorphism in the mucin domain of TIM-1 confers protections against HIV-1 infection

Biasin, M., Sironi, M., Saulle, I., Pontremoli, C., Garziano, M., Cagliani, R., Trabattoni, D., Lo Caputo, S., Vichi, F., Mazzotta, F., Forni, D., Riva, S., Aguilar-Jimenez, W., Cedeño, S., Sanchez, J., Brander, C., Zapata, W., Rugeles, M. T. & Clerici, M., 2017, In : Microbes and Infection. 19(1), 69-74, p. 69-74

Research output: Contribution to journalArticle

Mucin-1
Mucins
HIV Infections
HIV-1
T-Lymphocytes
7 Citations (Scopus)
Aptitude
Language
Learning
Dyslexia
Reading
4 Citations (Scopus)
Neanderthals
Genes
Genetic Selection
Hominidae
Spermatogenesis
4 Citations (Scopus)
Neanderthals
Genes
Genetic Selection
Hominidae
Spermatogenesis
3 Citations (Scopus)
Old World Arenaviruses
Arenaviridae
Lymphocytic choriomeningitis virus
nucleoproteins
Nucleoproteins
3 Citations (Scopus)

Evolutionary analysis of Old World arenaviruses reveals a major adaptive contribution of the viral polymerase

Pontremoli, C., Forni, D., Cagliani, R., Pozzoli, U., Riva, S., Bravo, I. G., Clerici, M. & Sironi, M., Oct 2017, In : Molecular Ecology. 26, 19, p. 5173-5188 16 p.

Research output: Contribution to journalArticle

Old World Arenaviruses
Arenaviridae
Lymphocytic choriomeningitis virus
nucleoproteins
Nucleoproteins
20 Citations (Scopus)

Molecular Evolution of Human Coronavirus Genomes

Forni, D., Cagliani, R., Clerici, M. S. & Sironi, M., 2017, In : Trends in Microbiology. 25, 1, p. 35-48

Research output: Contribution to journalArticle

Coronavirus
Molecular Evolution
Human Genome
SARS Virus
Genetic Recombination
5 Citations (Scopus)
Neurogenesis
Primates
Minisatellite Repeats
Atrophy
Exons
5 Citations (Scopus)
Neurogenesis
Primates
Minisatellite Repeats
Atrophy
Exons
2 Citations (Scopus)

Susceptibility to type 2 diabetes may be modulated by haplotypes in G6PC2, a target of positive selection

Al-Daghri, N. M., Pontremoli, C., Cagliani, R., Forni, D., Alokail, M. S., Al-Attas, O. S., Sabico, S., Riva, S., Clerici, M. & Sironi, M., Feb 7 2017, In : BMC Evolutionary Biology. 17, 1, p. 1-14 14 p.

Research output: Contribution to journalArticle

diabetes
noninsulin-dependent diabetes mellitus
haplotypes
glucose
fasting
2 Citations (Scopus)

Susceptibility to type 2 diabetes may be modulated by haplotypes in G6PC2, a target of positive selection

Al-Daghri, N. M., Pontremoli, C., Cagliani, R., Forni, D., Alokail, M. S., Al-Attas, O. S., Sabico, S., Riva, S., Clerici, M. & Sironi, M., Feb 7 2017, In : BMC Evolutionary Biology. 17, 1, p. 43

Research output: Contribution to journalArticle

diabetes
noninsulin-dependent diabetes mellitus
haplotypes
glucose
fasting
12 Citations (Scopus)

TLR3 mutations in adult patients with herpes simplex virus and varicella-zoster virus encephalitis

Sironi, M., Peri, A. M., Cagliani, R., Forni, D., Riva, S., Biasin, M., Clerici, M. & Gori, A., 2017, In : Journal of Infectious Diseases. 215, 9, p. 1430-1434 5 p.

Research output: Contribution to journalArticle

Varicella Zoster Encephalitis
Toll-Like Receptor 3
Human Herpesvirus 3
Simplexvirus
Mutation
12 Citations (Scopus)

TLR3 Mutations in Adult Patients With Herpes Simplex Virus and Varicella-Zoster Virus Encephalitis

Sironi, M., Peri, A. M., Cagliani, R., Forni, D., Riva, S., Biasin, M., Clerici, M. & Gori, A., May 1 2017, In : The Journal of infectious diseases. 215, 9, p. 1430-1434 5 p.

Research output: Contribution to journalArticle

Varicella Zoster Encephalitis
Toll-Like Receptor 3
Human Herpesvirus 3
Simplexvirus
Mutation
2016

A 6-amino acid insertion/deletion polymorphism in the mucin domain of TIM-1 confers protections against HIV-1 infection

Biasin, M., Sironi, M., Saulle, I., Pontremoli, C., Garziano, M., Cagliani, R., Trabattoni, D., Lo Caputo, S., Vichi, F., Mazzotta, F., Forni, D., Riva, S., Aguilar-Jimenez, W., Cedeno, S., Sanchez, J., Brander, C., Zapata, W., Rugeles, M. T. & Clerici, M. S., Aug 2 2016, (Accepted/In press) In : Microbes and Infection.

Research output: Contribution to journalArticle

Mucin-1
Mucins
HIV Infections
HIV-1
T-Lymphocytes
10 Citations (Scopus)

Extensive positive selection drives the evolution of nonstructural proteins in lineage C betacoronaviruses

Forni, D., Cagliani, R., Mozzi, A., Pozzoli, U., Al-Daghri, N., Clerici, M. & Sironi, M., 2016, In : Journal of Virology. 90, 7, p. 3627-3639 13 p.

Research output: Contribution to journalArticle

Betacoronavirus
Coronavirinae
Middle East
Camelus
camels

Extensive positive selection drives the evolution of nonstructural proteins in lineage C betacoronaviruses

Forni, D., Cagliani, R., Mozzi, A., Pozzoli, U., Al-Daghri, N., Clerici, M. S. & Sironi, M., 2016, In : Journal of Virology. 90, 7, p. 3627-3639 13 p.

Research output: Contribution to journalArticle

Betacoronavirus
Coronavirinae
Middle East
Camelus
camels
20 Citations (Scopus)

Molecular Evolution of Human Coronavirus Genomes

Forni, D., Cagliani, R., Clerici, M. & Sironi, M., Oct 19 2016, In : Trends in Microbiology.

Research output: Contribution to journalArticle

Coronavirus
Molecular Evolution
Human Genome
SARS Virus
Genetic Recombination
Flavivirus
Dengue Virus
Japanese Encephalitis Virus
Proteins
Polyproteins
28 Citations (Scopus)
Flavivirus
Dengue Virus
Japanese Encephalitis Virus
Proteins
Polyproteins

Positive Selection Drives Evolution at the Host-Filovirus Interaction Surface

Pontremoli, C., Forni, D., Cagliani, R., Filippi, G., De Gioia, L., Pozzoli, U., Clerici, M. S. & Sironi, M., Nov 1 2016, In : Molecular Biology and Evolution. 33, 11, p. 2836-2847 12 p.

Research output: Contribution to journalArticle

Filoviridae
glycoproteins
Glycoproteins
Ebolavirus
Epitopes
6 Citations (Scopus)

Positive Selection Drives Evolution at the Host-Filovirus Interaction Surface

Pontremoli, C., Forni, D., Cagliani, R., Filippi, G., De Gioia, L., Pozzoli, U., Clerici, M. & Sironi, M., Nov 1 2016, In : Molecular Biology and Evolution. 33, 11, p. 2836-2847 12 p.

Research output: Contribution to journalArticle

Filoviridae
glycoproteins
Glycoproteins
Ebolavirus
Epitopes