A novel donor splice site characterized by CFTR mRNA analysis induces a new pseudo-exon in CF patients

Lucy Costantino, Laura Claut, Valentina Paracchini, Domenico A. Coviello, Carla Colombo, Luigi Porcaro, Patrizia Capasso, Maddalena Zanardelli, Giovanna Pizzamiglio, Dario Degiorgio, Manuela Seia

Research output: Contribution to journalArticle

11 Citations (Scopus)

Abstract

Background: The CFTR gene is tightly regulated and differentially expressed in many mucosal epithelial cell types. There is evidence of an increasing number of genomic variations in the intronic regions influencing mRNA splicing, and also the level of normal CFTR transcript. Methods: In the present study, we investigate the molecular defect by RT-PCR analyzing the mRNA of 25 cystic fibrosis (CF) patients in whom only one or no CF allele had been identified after DNA analysis (of all the exons of the CFTR gene). Results: mRNA analysis led to the detection of a cryptic exon in two patients: the new exon is a 104. bp insertion between exons 10 and 11 and is caused by a new point mutation c.1584. +. 18672. bp A. >G (http://www.hgvs.org/mutnomen/) discovered in intron 10; moreover, they showed the absence of exon 9 skipping. Conclusions: Our results confirm the utility of RNA analysis in discovering new mutations and in investigating their effect on normal splicing processes.

Original languageEnglish
Pages (from-to)411-418
Number of pages8
JournalJournal of Cystic Fibrosis
Volume9
Issue number6
DOIs
Publication statusPublished - Dec 2010

Fingerprint

RNA Splice Sites
Cystic Fibrosis
Exons
Messenger RNA
Point Mutation
Introns
Genes
Epithelial Cells
Alleles
RNA
Polymerase Chain Reaction
Mutation
DNA

Keywords

  • CFTR
  • Cystic fibrosis
  • MRNA
  • Pseudo-exon
  • Splicing

ASJC Scopus subject areas

  • Pulmonary and Respiratory Medicine
  • Pediatrics, Perinatology, and Child Health

Cite this

A novel donor splice site characterized by CFTR mRNA analysis induces a new pseudo-exon in CF patients. / Costantino, Lucy; Claut, Laura; Paracchini, Valentina; Coviello, Domenico A.; Colombo, Carla; Porcaro, Luigi; Capasso, Patrizia; Zanardelli, Maddalena; Pizzamiglio, Giovanna; Degiorgio, Dario; Seia, Manuela.

In: Journal of Cystic Fibrosis, Vol. 9, No. 6, 12.2010, p. 411-418.

Research output: Contribution to journalArticle

Costantino, Lucy ; Claut, Laura ; Paracchini, Valentina ; Coviello, Domenico A. ; Colombo, Carla ; Porcaro, Luigi ; Capasso, Patrizia ; Zanardelli, Maddalena ; Pizzamiglio, Giovanna ; Degiorgio, Dario ; Seia, Manuela. / A novel donor splice site characterized by CFTR mRNA analysis induces a new pseudo-exon in CF patients. In: Journal of Cystic Fibrosis. 2010 ; Vol. 9, No. 6. pp. 411-418.
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