A putative functional variant within the UBAC2 gene is associated with increased risk of Behçet's disease

Amr H. Sawalha, Travis Hughes, Ajay Nadig, Vuslat Yilmaz, Kenan Aksu, Gokhan Keser, Ayse Cefle, Ayten Yazicai, Andaç Ergen, Marta E. Alarcón-Riquelme, Carlo Salvarani, Bruno Casali, Haner Direskeneli, Güher Saruhan-Direskeneli

Research output: Contribution to journalArticle

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Abstract

Objective Using a genome-wide association scan and DNA pooling, we previously identified 5 novel genetic susceptibility loci for Behçet's disease. We undertook this study to establish the genetic effect within the UBAC2 gene, in the course of which we replicated this genetic association and identified a functional variant within this locus. Methods We studied a total of 676 Behçet's disease patients and 1,096 controls. The discovery set included 156 patients and 167 controls from Turkey, and the replication sets included 376 patients and 369 controls from Turkey and 144 patients and 560 controls from Italy. Genotyping of 14 single-nucleotide polymorphisms (SNPs) within and around UBAC2 was performed using TaqMan SNP genotyping assays. Results The genetic association between Behçet's disease and UBAC2 was established, replicated, and confirmed (meta-analysis odds ratio 1.84, P = 1.69 × 10-7). Haplotype analysis identified both a disease-risk haplotype and a protective haplotype (P = 0.00014 and P = 0.0075, respectively). Using conditional haplotype analysis, we identified the SNP rs7999348 (A/G) within UBAC2 as the most likely SNP with a genetic effect independent of the haplotypic effect formed by the remaining associated SNPs in this locus. Indeed, we demonstrated that rs7999348 tags a functional variant associated with increased messenger RNA expression of a UBAC2 transcript variant in peripheral blood mononuclear cells of individuals homozygous for the Behçet's disease-associated "G" allele. Further, our data suggested the possibility of multiple genetic effects that increase susceptibility to Behçet's disease in the UBAC2 locus. Conclusion We established and confirmed the genetic association between UBAC2 and Behçet's disease in 3 independent sets of patients and controls. We identified the minor allele in rs7999348 as a disease-risk allele that tags altered UBAC2 expression.

Original languageEnglish
Pages (from-to)3607-3612
Number of pages6
JournalArthritis and Rheumatism
Volume63
Issue number11
DOIs
Publication statusPublished - Nov 2011

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Single Nucleotide Polymorphism
Haplotypes
Genes
Alleles
Turkey
Genetic Loci
Genome-Wide Association Study
Genetic Predisposition to Disease
Italy
Meta-Analysis
Blood Cells
Odds Ratio
Messenger RNA
DNA

ASJC Scopus subject areas

  • Immunology
  • Immunology and Allergy
  • Rheumatology
  • Pharmacology (medical)

Cite this

Sawalha, A. H., Hughes, T., Nadig, A., Yilmaz, V., Aksu, K., Keser, G., ... Saruhan-Direskeneli, G. (2011). A putative functional variant within the UBAC2 gene is associated with increased risk of Behçet's disease. Arthritis and Rheumatism, 63(11), 3607-3612. https://doi.org/10.1002/art.30604

A putative functional variant within the UBAC2 gene is associated with increased risk of Behçet's disease. / Sawalha, Amr H.; Hughes, Travis; Nadig, Ajay; Yilmaz, Vuslat; Aksu, Kenan; Keser, Gokhan; Cefle, Ayse; Yazicai, Ayten; Ergen, Andaç; Alarcón-Riquelme, Marta E.; Salvarani, Carlo; Casali, Bruno; Direskeneli, Haner; Saruhan-Direskeneli, Güher.

In: Arthritis and Rheumatism, Vol. 63, No. 11, 11.2011, p. 3607-3612.

Research output: Contribution to journalArticle

Sawalha, AH, Hughes, T, Nadig, A, Yilmaz, V, Aksu, K, Keser, G, Cefle, A, Yazicai, A, Ergen, A, Alarcón-Riquelme, ME, Salvarani, C, Casali, B, Direskeneli, H & Saruhan-Direskeneli, G 2011, 'A putative functional variant within the UBAC2 gene is associated with increased risk of Behçet's disease', Arthritis and Rheumatism, vol. 63, no. 11, pp. 3607-3612. https://doi.org/10.1002/art.30604
Sawalha, Amr H. ; Hughes, Travis ; Nadig, Ajay ; Yilmaz, Vuslat ; Aksu, Kenan ; Keser, Gokhan ; Cefle, Ayse ; Yazicai, Ayten ; Ergen, Andaç ; Alarcón-Riquelme, Marta E. ; Salvarani, Carlo ; Casali, Bruno ; Direskeneli, Haner ; Saruhan-Direskeneli, Güher. / A putative functional variant within the UBAC2 gene is associated with increased risk of Behçet's disease. In: Arthritis and Rheumatism. 2011 ; Vol. 63, No. 11. pp. 3607-3612.
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abstract = "Objective Using a genome-wide association scan and DNA pooling, we previously identified 5 novel genetic susceptibility loci for Beh{\cc}et's disease. We undertook this study to establish the genetic effect within the UBAC2 gene, in the course of which we replicated this genetic association and identified a functional variant within this locus. Methods We studied a total of 676 Beh{\cc}et's disease patients and 1,096 controls. The discovery set included 156 patients and 167 controls from Turkey, and the replication sets included 376 patients and 369 controls from Turkey and 144 patients and 560 controls from Italy. Genotyping of 14 single-nucleotide polymorphisms (SNPs) within and around UBAC2 was performed using TaqMan SNP genotyping assays. Results The genetic association between Beh{\cc}et's disease and UBAC2 was established, replicated, and confirmed (meta-analysis odds ratio 1.84, P = 1.69 × 10-7). Haplotype analysis identified both a disease-risk haplotype and a protective haplotype (P = 0.00014 and P = 0.0075, respectively). Using conditional haplotype analysis, we identified the SNP rs7999348 (A/G) within UBAC2 as the most likely SNP with a genetic effect independent of the haplotypic effect formed by the remaining associated SNPs in this locus. Indeed, we demonstrated that rs7999348 tags a functional variant associated with increased messenger RNA expression of a UBAC2 transcript variant in peripheral blood mononuclear cells of individuals homozygous for the Beh{\cc}et's disease-associated {"}G{"} allele. Further, our data suggested the possibility of multiple genetic effects that increase susceptibility to Beh{\cc}et's disease in the UBAC2 locus. Conclusion We established and confirmed the genetic association between UBAC2 and Beh{\cc}et's disease in 3 independent sets of patients and controls. We identified the minor allele in rs7999348 as a disease-risk allele that tags altered UBAC2 expression.",
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AU - Hughes, Travis

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AU - Aksu, Kenan

AU - Keser, Gokhan

AU - Cefle, Ayse

AU - Yazicai, Ayten

AU - Ergen, Andaç

AU - Alarcón-Riquelme, Marta E.

AU - Salvarani, Carlo

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