Advances in Alport syndrome diagnosis using next-generation sequencing

Rosangela Artuso, Chiara Fallerini, Laura Dosa, Francesca Scionti, Maurizio Clementi, Guido Garosi, Laura Massella, Maria Carmela Epistolato, Roberta Mancini, Francesca Mari, Ilaria Longo, Francesca Ariani, Alessandra Renieri, Mirella Bruttini

Research output: Contribution to journalArticle

Abstract

Alport syndrome (ATS) is a hereditary nephropathy often associated with sensorineural hypoacusis and ocular abnormalities. Mutations in the COL4A5 gene cause X-linked ATS. Mutations in COL4A4 and COL4A3 genes have been reported in both autosomal recessive and autosomal dominant ATS. The conventional mutation screening, performed by DHPLC and/or Sanger sequencing, is time-consuming and has relatively high costs because of the absence of hot spots and to the high number of exons per gene: 51 (COL4A5), 48 (COL4A4) and 52 (COL4A3). Several months are usually necessary to complete the diagnosis, especially in cases with less informative pedigrees. To overcome these limitations, we designed a next-generation sequencing (NGS) protocol enabling simultaneous detection of all possible variants in the three genes. We used a method coupling selective amplification to the 454 Roche DNA sequencing platform (Genome Sequencer junior). The application of this technology allowed us to identify the second mutation in two ATS patients (p.Ser1147Phe in COL4A3 and p.Arg1682Trp in COL4A4) and to reconsider the diagnosis of ATS in a third patient. This study, therefore, illustrates the successful application of NGS to mutation screening of Mendelian disorders with locus heterogeneity.

Original languageEnglish
Pages (from-to)50-57
Number of pages8
JournalEuropean Journal of Human Genetics
Volume20
Issue number1
DOIs
Publication statusPublished - Jan 2012

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Keywords

  • Alport syndrome
  • DNA sequencing
  • next-generation sequencing

ASJC Scopus subject areas

  • Genetics(clinical)
  • Genetics

Cite this

Artuso, R., Fallerini, C., Dosa, L., Scionti, F., Clementi, M., Garosi, G., Massella, L., Epistolato, M. C., Mancini, R., Mari, F., Longo, I., Ariani, F., Renieri, A., & Bruttini, M. (2012). Advances in Alport syndrome diagnosis using next-generation sequencing. European Journal of Human Genetics, 20(1), 50-57. https://doi.org/10.1038/ejhg.2011.164