Allele-Specific Expression at the RET Locus in Blood and Gut Tissue of Individuals Carrying Risk Alleles for Hirschsprung Disease

Ivana Matera, Marco Musso, Paola Griseri, Marta Rusmini, Marco Di Duca, Man Ting So, Domenico Mavilio, Xiaoping Miao, Paul Hk Tam, Roberto Ravazzolo, Isabella Ceccherini, Merce Garcia-Barcelo

Research output: Contribution to journalArticle

Abstract

RET common variants are associated with Hirschsprung disease (HSCR; colon aganglionosis), a congenital defect of the enteric nervous system. We analyzed a well-known HSCR-associated RET haplotype that encompasses linked alleles in coding and noncoding/regulatory sequences. This risk haplotype correlates with reduced level of RET expression when compared with the wild-type counterpart. As allele-specific expression (ASE) contributes to phenotypic variability in health and disease, we investigated whether RET ASE could contribute to the overall reduction of RET mRNA detected in carriers. We tested heterozygous neuroblastoma cell lines, ganglionic gut tissues (18 HSCR and 14 non-HSCR individuals) and peripheral blood mononuclear cells (PBMCs; 16 HSCR and 14 non-HSCR individuals). Analysis of the data generated by SNaPshot and Pyrosequencing revealed that the RET risk haplotype is significantly more expressed in gut than in PBMCs (P = 0.0045). No ASE difference was detected between patients and controls, irrespective of the sample type. Comparison of total RET expression levels between gut samples with and without ASE, correlated reduced RET expression with preferential transcription from the RET risk haplotype. Nonrandom RET ASE occurs in ganglionic gut regardless of the disease status. RET ASE should not be excluded as a disease mechanism acting during development.

Original languageEnglish
Pages (from-to)754-762
Number of pages9
JournalHuman Mutation
Volume34
Issue number5
DOIs
Publication statusPublished - May 2013

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Keywords

  • Allele-specific expression
  • Hirschprung disease
  • Regulatory polymorphisms
  • RET

ASJC Scopus subject areas

  • Genetics
  • Genetics(clinical)

Cite this

Matera, I., Musso, M., Griseri, P., Rusmini, M., Di Duca, M., So, M. T., Mavilio, D., Miao, X., Tam, P. H., Ravazzolo, R., Ceccherini, I., & Garcia-Barcelo, M. (2013). Allele-Specific Expression at the RET Locus in Blood and Gut Tissue of Individuals Carrying Risk Alleles for Hirschsprung Disease. Human Mutation, 34(5), 754-762. https://doi.org/10.1002/humu.22302