Amino substituted nitrogen heterocycle ureas as kinase insert domain containing receptor (KDR) inhibitors: Performance of structure-activity relationship approaches

Hayriye Yilmaz, Natalia Sizochenko, Bakhtiyor Rasulev, Andrey Toropov, Yahya Guzel, Viktor Kuz'Min, Danuta Leszczynska, Jerzy Leszczynski

Research output: Contribution to journalArticle

Abstract

A quantitative structure-activity relationship (QSAR) study was performed on a set of amino-substituted nitrogen heterocyclic urea derivatives. Two novel approaches were applied: (1) the simplified molecular input-line entry systems (SMILES) based optimal descriptors approach; and (2) the fragment-based simplex representation of molecular structure (SiRMS) approach. Comparison with the classic scheme of building up the model and balance of correlation (BC) for optimal descriptors approach shows that the BC scheme provides more robust predictions than the classic scheme for the considered pIC50 of the heterocyclic urea derivatives. Comparison of the SMILES-based optimal descriptors and SiRMS approaches has confirmed good performance of both techniques in prediction of kinase insert domain containing receptor (KDR) inhibitory activity, expressed as a logarithm of inhibitory concentration (pIC50) of studied compounds.

Original languageEnglish
Pages (from-to)168-175
Number of pages8
JournalJournal of Food and Drug Analysis
Volume23
Issue number2
DOIs
Publication statusPublished - 2015

Fingerprint

Vascular Endothelial Growth Factor Receptor-2
amino nitrogen
structure-activity relationships
Structure-Activity Relationship
Molecular Structure
chemical structure
Urea
phosphotransferases (kinases)
Nitrogen
urea
chemical derivatives
quantitative structure-activity relationships
receptors
prediction
Quantitative Structure-Activity Relationship
methodology

Keywords

  • amino-substituted nitrogen heterocyclic ureas
  • descriptors
  • KDR inhibitors
  • QSAR
  • SiRMS
  • SMILES

ASJC Scopus subject areas

  • Food Science
  • Pharmacology

Cite this

Amino substituted nitrogen heterocycle ureas as kinase insert domain containing receptor (KDR) inhibitors : Performance of structure-activity relationship approaches. / Yilmaz, Hayriye; Sizochenko, Natalia; Rasulev, Bakhtiyor; Toropov, Andrey; Guzel, Yahya; Kuz'Min, Viktor; Leszczynska, Danuta; Leszczynski, Jerzy.

In: Journal of Food and Drug Analysis, Vol. 23, No. 2, 2015, p. 168-175.

Research output: Contribution to journalArticle

Yilmaz, Hayriye ; Sizochenko, Natalia ; Rasulev, Bakhtiyor ; Toropov, Andrey ; Guzel, Yahya ; Kuz'Min, Viktor ; Leszczynska, Danuta ; Leszczynski, Jerzy. / Amino substituted nitrogen heterocycle ureas as kinase insert domain containing receptor (KDR) inhibitors : Performance of structure-activity relationship approaches. In: Journal of Food and Drug Analysis. 2015 ; Vol. 23, No. 2. pp. 168-175.
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