Bio-image warehouse system: Concept and implementation of a diagnosis-based data warehouse for advanced imaging modalities in neuroradiology

Research output: Contribution to journalArticle

9 Citations (Scopus)

Abstract

Advanced neuroimaging techniques, such as functional magnetic resonance imaging (fMRI), chemical shift spectroscopy imaging (CSI), diffusion tensor imaging (DTI), and perfusion-weighted imaging (PWI) create novel challenges in terms of data storage and management: huge amounts of raw data are generated, the results of analysis may depend on the software and settings that have been used, and most often intermediate files are inherently not compliant with the current DICOM (digital imaging and communication in medicine) standard, as they contain multidimensional complex and tensor arrays and various other types of data structures. A software architecture, referred to as Bio-Image Warehouse System (BIWS), which can be used alongside a radiology information system/picture archiving and communication system (RIS/PACS) system to store neuroimaging data for research purposes, is presented. The system architecture is conceived with the purpose of enabling to query by diagnosis according to a predefined two-layered classification taxonomy. The operational impact of the system and the time needed to get acquainted with the web-based interface and with the taxonomy are found to be limited. The development of modules enabling automated creation of statistical templates is proposed.

Original languageEnglish
Pages (from-to)32-41
Number of pages10
JournalJournal of Digital Imaging
Volume20
Issue number1
DOIs
Publication statusPublished - Mar 2007

Fingerprint

Neuroimaging
Data warehouses
Warehouses
Taxonomies
Radiology Information Systems
Diffusion tensor imaging
Digital Imaging and Communications in Medicine (DICOM)
Imaging techniques
Picture archiving and communication systems
Radiology
Chemical shift
Software architecture
Software
Magnetic Resonance Imaging
Tensors
Data structures
Information systems
Diffusion Tensor Imaging
Perfusion Imaging
Information Storage and Retrieval

Keywords

  • Data warehouse
  • Image repository
  • Neuroradiology
  • PACS
  • Web-based

ASJC Scopus subject areas

  • Radiology Nuclear Medicine and imaging
  • Radiological and Ultrasound Technology
  • Computer Vision and Pattern Recognition

Cite this

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abstract = "Advanced neuroimaging techniques, such as functional magnetic resonance imaging (fMRI), chemical shift spectroscopy imaging (CSI), diffusion tensor imaging (DTI), and perfusion-weighted imaging (PWI) create novel challenges in terms of data storage and management: huge amounts of raw data are generated, the results of analysis may depend on the software and settings that have been used, and most often intermediate files are inherently not compliant with the current DICOM (digital imaging and communication in medicine) standard, as they contain multidimensional complex and tensor arrays and various other types of data structures. A software architecture, referred to as Bio-Image Warehouse System (BIWS), which can be used alongside a radiology information system/picture archiving and communication system (RIS/PACS) system to store neuroimaging data for research purposes, is presented. The system architecture is conceived with the purpose of enabling to query by diagnosis according to a predefined two-layered classification taxonomy. The operational impact of the system and the time needed to get acquainted with the web-based interface and with the taxonomy are found to be limited. The development of modules enabling automated creation of statistical templates is proposed.",
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