Brain derived neurotrophic factor (BDNF) expression is regulated by microRNAs miR-26a and miR-26b allele-specific binding

Viviana Caputo, Lorenzo Sinibaldi, Alessia Fiorentino, Chiara Parisi, Caterina Catalanotto, Augusto Pasini, Carlo Cogoni, Antonio Pizzuti

Research output: Contribution to journalArticle

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Abstract

Brain-derived neurotrophic factor (BDNF) is a neurotrophin that plays an essential role in neuronal development and plasticity. MicroRNA (miRNAs) are small non-coding RNAs of about 22-nucleotides in length regulating gene expression at post-transcriptional level. In this study we explore the role of miRNAs as post-transcriptional inhibitors of BDNF and the effect of 3'UTR sequence variations on miRNAs binding capacity. Using an in silico approach we identified a group of miRNAs putatively regulating BDNF expression and binding to BDNF 3'UTR polymorphic sequences. Luciferase assays demonstrated that these miRNAs (miR-26a1/2 and miR-26b) downregulates BDNF expression and that the presence of the variant alleles of two single nucleotide polymorphisms (rs11030100 and rs11030099) mapping in BDNF 3'UTR specifically abrogates miRNAs targeting. Furthermore we found a high linkage disequilibrium rate between rs11030100, rs11030099 and the non-synonymous coding variant rs6265 (Val66Met), which modulates BDNF mRNA localization and protein intracellular trafficking. Such observation led to hypothesize that miR-26s mediated regulation could extend to rs6265 leading to an allelic imbalance with potentially functional effects, such as peptide's localization and activity-dependent secretion. Since rs6265 has been previously implicated in various neuropsychiatric disorders, we evaluated the distribution of rs11030100, rs11030099 and rs6265 both in a control and schizophrenic group, but no significant difference in allele frequencies emerged. In conclusion, in the present study we identified two novel miRNAs regulating BDNF expression and the first BDNF 3'UTR functional variants altering miRNAs-BDNF binding.

Original languageEnglish
Article numbere28656
JournalPLoS One
Volume6
Issue number12
DOIs
Publication statusPublished - Dec 14 2011

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neurotrophins
Brain-Derived Neurotrophic Factor
MicroRNAs
microRNA
Alleles
alleles
brain
3' Untranslated Regions
3' untranslated regions
Nucleotides
Allelic Imbalance
Small Untranslated RNA
Neuronal Plasticity
Linkage Disequilibrium
Nerve Growth Factors
Protein Transport
Polymorphism
Luciferases
binding capacity
Gene Frequency

ASJC Scopus subject areas

  • Agricultural and Biological Sciences(all)
  • Biochemistry, Genetics and Molecular Biology(all)
  • Medicine(all)

Cite this

Caputo, V., Sinibaldi, L., Fiorentino, A., Parisi, C., Catalanotto, C., Pasini, A., ... Pizzuti, A. (2011). Brain derived neurotrophic factor (BDNF) expression is regulated by microRNAs miR-26a and miR-26b allele-specific binding. PLoS One, 6(12), [e28656]. https://doi.org/10.1371/journal.pone.0028656

Brain derived neurotrophic factor (BDNF) expression is regulated by microRNAs miR-26a and miR-26b allele-specific binding. / Caputo, Viviana; Sinibaldi, Lorenzo; Fiorentino, Alessia; Parisi, Chiara; Catalanotto, Caterina; Pasini, Augusto; Cogoni, Carlo; Pizzuti, Antonio.

In: PLoS One, Vol. 6, No. 12, e28656, 14.12.2011.

Research output: Contribution to journalArticle

Caputo, V, Sinibaldi, L, Fiorentino, A, Parisi, C, Catalanotto, C, Pasini, A, Cogoni, C & Pizzuti, A 2011, 'Brain derived neurotrophic factor (BDNF) expression is regulated by microRNAs miR-26a and miR-26b allele-specific binding', PLoS One, vol. 6, no. 12, e28656. https://doi.org/10.1371/journal.pone.0028656
Caputo, Viviana ; Sinibaldi, Lorenzo ; Fiorentino, Alessia ; Parisi, Chiara ; Catalanotto, Caterina ; Pasini, Augusto ; Cogoni, Carlo ; Pizzuti, Antonio. / Brain derived neurotrophic factor (BDNF) expression is regulated by microRNAs miR-26a and miR-26b allele-specific binding. In: PLoS One. 2011 ; Vol. 6, No. 12.
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