Clinical Bioinformatics: Challenges and opportunities

Riccardo Bellazzi, Marco Masseroli, Shawn Murphy, Amnon Shabo, Paolo Romano

Research output: Contribution to journalArticle

Abstract

Background: Network Tools and Applications in Biology (NETTAB) Workshops are a series of meetings focused on the most promising and innovative ICT tools and to their usefulness in Bioinformatics. The NETTAB 2011 workshop, held in Pavia, Italy, in October 2011 was aimed at presenting some of the most relevant methods, tools and infrastructures that are nowadays available for Clinical Bioinformatics (CBI), the research field that deals with clinical applications of bioinformatics. Methods: In this editorial, the viewpoints and opinions of three world CBI leaders, who have been invited to participate in a panel discussion of the NETTAB workshop on the next challenges and future opportunities of this field, are reported. These include the development of data warehouses and ICT infrastructures for data sharing, the definition of standards for sharing phenotypic data and the implementation of novel tools to implement efficient search computing solutions. Results: Some of the most important design features of a CBI-ICT infrastructure are presented, including data warehousing, modularity and flexibility, open-source development, semantic interoperability, integrated search and retrieval of -omics information. Conclusions: Clinical Bioinformatics goals are ambitious. Many factors, including the availability of high-throughput "-omics" technologies and equipment, the widespread availability of clinical data warehouses and the noteworthy increase in data storage and computational power of the most recent ICT systems, justify research and efforts in this domain, which promises to be a crucial leveraging factor for biomedical research.

Original languageEnglish
Article numberS1
JournalBMC Bioinformatics
Volume13
Issue numberSUPPL 1
DOIs
Publication statusPublished - Sep 7 2012

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Bioinformatics
Computational Biology
Data warehouses
Biology
Data Sharing
Information Dissemination
Infrastructure
Data Warehouse
Information Storage and Retrieval
Education
Availability
Semantic Interoperability
Data Warehousing
Data Storage
Modularity
Research
Semantics
Interoperability
Open Source
Justify

ASJC Scopus subject areas

  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Applied Mathematics
  • Structural Biology

Cite this

Bellazzi, R., Masseroli, M., Murphy, S., Shabo, A., & Romano, P. (2012). Clinical Bioinformatics: Challenges and opportunities. BMC Bioinformatics, 13(SUPPL 1), [S1]. https://doi.org/10.1186/1471-2105-13-S14-S1

Clinical Bioinformatics : Challenges and opportunities. / Bellazzi, Riccardo; Masseroli, Marco; Murphy, Shawn; Shabo, Amnon; Romano, Paolo.

In: BMC Bioinformatics, Vol. 13, No. SUPPL 1, S1, 07.09.2012.

Research output: Contribution to journalArticle

Bellazzi, R, Masseroli, M, Murphy, S, Shabo, A & Romano, P 2012, 'Clinical Bioinformatics: Challenges and opportunities', BMC Bioinformatics, vol. 13, no. SUPPL 1, S1. https://doi.org/10.1186/1471-2105-13-S14-S1
Bellazzi, Riccardo ; Masseroli, Marco ; Murphy, Shawn ; Shabo, Amnon ; Romano, Paolo. / Clinical Bioinformatics : Challenges and opportunities. In: BMC Bioinformatics. 2012 ; Vol. 13, No. SUPPL 1.
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