CORAL: Binary classifications (active/inactive) for liver-related adverse effects of drugs

Andrey A. Toropov, Alla P. Toropova, Bakhtiyor F. Rasulev, Emilio Benfenati, Giuseppina Gini, Danuta Leszczynska, Jerzy Leszczynski

Research output: Contribution to journalArticle

Abstract

Classification data related to the Liver-Related Adverse Effects of Drugs have been studied with the CORAL software (http://www.insilico.eu/coral). Two datasets which contain compounds with two serum enzyme markers of liver toxicity: alanine aminotransferase (ALT, n=187) and aspartate aminotransferase (AST, n=209) are analyzed. Statistical quality of the prediction for ALT activity is n=35, Sensitivity = 0.5556, Specificity = 0.8077, and Accuracy = 0.7429. In the case of AST activity the prediction is characterized by n=42, Sensitivity = 0.6875, Specificity = 0.7692, and Accuracy = 0.7381. A number of structural alerts which can be related to the studied activities are revealed. It is the first attempt to build up the classification QSAR model by means of the Monte Carlo technique based on representation of the molecular structure by SMILES using the CORAL software.

Original languageEnglish
Pages (from-to)257-261
Number of pages5
JournalCurrent Drug Safety
Volume7
Issue number4
DOIs
Publication statusPublished - 2012

Fingerprint

Liver
Software
Sensitivity and Specificity
Quantitative Structure-Activity Relationship
Aspartate Aminotransferases
Molecular Structure
Alanine Transaminase
Pharmaceutical Preparations
Molecular structure
Toxicity
Biomarkers
Enzymes
Datasets

Keywords

  • Binary classification
  • CORAL software
  • Liver-related adverse effect
  • Method monte carlo
  • Optimal descriptor
  • QSAR

ASJC Scopus subject areas

  • Pharmacology (medical)
  • Toxicology
  • Pharmacology

Cite this

Toropov, A. A., Toropova, A. P., Rasulev, B. F., Benfenati, E., Gini, G., Leszczynska, D., & Leszczynski, J. (2012). CORAL: Binary classifications (active/inactive) for liver-related adverse effects of drugs. Current Drug Safety, 7(4), 257-261. https://doi.org/10.2174/157488612804096542

CORAL : Binary classifications (active/inactive) for liver-related adverse effects of drugs. / Toropov, Andrey A.; Toropova, Alla P.; Rasulev, Bakhtiyor F.; Benfenati, Emilio; Gini, Giuseppina; Leszczynska, Danuta; Leszczynski, Jerzy.

In: Current Drug Safety, Vol. 7, No. 4, 2012, p. 257-261.

Research output: Contribution to journalArticle

Toropov, AA, Toropova, AP, Rasulev, BF, Benfenati, E, Gini, G, Leszczynska, D & Leszczynski, J 2012, 'CORAL: Binary classifications (active/inactive) for liver-related adverse effects of drugs', Current Drug Safety, vol. 7, no. 4, pp. 257-261. https://doi.org/10.2174/157488612804096542
Toropov, Andrey A. ; Toropova, Alla P. ; Rasulev, Bakhtiyor F. ; Benfenati, Emilio ; Gini, Giuseppina ; Leszczynska, Danuta ; Leszczynski, Jerzy. / CORAL : Binary classifications (active/inactive) for liver-related adverse effects of drugs. In: Current Drug Safety. 2012 ; Vol. 7, No. 4. pp. 257-261.
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