TY - JOUR
T1 - Deep learning approach for the segmentation of aneurysmal ascending aorta
AU - Comelli, Albert
AU - Dahiya, Navdeep
AU - Stefano, Alessandro
AU - Benfante, Viviana
AU - Gentile, Giovanni
AU - Agnese, Valentina
AU - Raffa, Giuseppe M.
AU - Pilato, Michele
AU - Yezzi, Anthony
AU - Petrucci, Giovanni
AU - Pasta, Salvatore
N1 - Funding Information:
This work was partially supported by a grant (W911NF-18-1-0281) from USA Army Research Office (ARO) to Anthony Yezzi, by a grant (R01-HL-143350) from National Institute of Health (NIH) to Anthony Yezzi, and by a grant (GR-2011-02348129) from the Italian Ministry of Health to Salvatore Pasta.
Publisher Copyright:
© 2020, Korean Society of Medical and Biological Engineering.
Copyright:
Copyright 2020 Elsevier B.V., All rights reserved.
PY - 2020
Y1 - 2020
N2 - Diagnosis of ascending thoracic aortic aneurysm (ATAA) is based on the measurement of the maximum aortic diameter, but size is not a good predictor of the risk of adverse events. There is growing interest in the development of novel image-derived risk strategies to improve patient risk management towards a highly individualized level. In this study, the feasibility and efficacy of deep learning for the automatic segmentation of ATAAs was investigated using UNet, ENet, and ERFNet techniques. Specifically, CT angiography done on 72 patients with ATAAs and different valve morphology (i.e., tricuspid aortic valve, TAV, and bicuspid aortic valve, BAV) were semi-automatically segmented with Mimics software (Materialize NV, Leuven, Belgium), and then used for training of the tested deep learning models. The segmentation performance in terms of accuracy and time inference were compared using several parameters. All deep learning models reported a dice score higher than 88%, suggesting a good agreement between predicted and manual ATAA segmentation. We found that the ENet and UNet are more accurate than ERFNet, with the ENet much faster than UNet. This study demonstrated that deep learning models can rapidly segment and quantify the 3D geometry of ATAAs with high accuracy, thereby facilitating the expansion into clinical workflow of personalized approach to the management of patients with ATAAs.
AB - Diagnosis of ascending thoracic aortic aneurysm (ATAA) is based on the measurement of the maximum aortic diameter, but size is not a good predictor of the risk of adverse events. There is growing interest in the development of novel image-derived risk strategies to improve patient risk management towards a highly individualized level. In this study, the feasibility and efficacy of deep learning for the automatic segmentation of ATAAs was investigated using UNet, ENet, and ERFNet techniques. Specifically, CT angiography done on 72 patients with ATAAs and different valve morphology (i.e., tricuspid aortic valve, TAV, and bicuspid aortic valve, BAV) were semi-automatically segmented with Mimics software (Materialize NV, Leuven, Belgium), and then used for training of the tested deep learning models. The segmentation performance in terms of accuracy and time inference were compared using several parameters. All deep learning models reported a dice score higher than 88%, suggesting a good agreement between predicted and manual ATAA segmentation. We found that the ENet and UNet are more accurate than ERFNet, with the ENet much faster than UNet. This study demonstrated that deep learning models can rapidly segment and quantify the 3D geometry of ATAAs with high accuracy, thereby facilitating the expansion into clinical workflow of personalized approach to the management of patients with ATAAs.
KW - Aneurysm
KW - Aorta
KW - Aortic valve
KW - Deep learning
KW - Segmentation
UR - http://www.scopus.com/inward/record.url?scp=85096396712&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85096396712&partnerID=8YFLogxK
U2 - 10.1007/s13534-020-00179-0
DO - 10.1007/s13534-020-00179-0
M3 - Article
AN - SCOPUS:85096396712
JO - Biomedical Engineering Letters
JF - Biomedical Engineering Letters
SN - 2093-9868
ER -