DNA microarray-based solid-phase PCR on copoly (DMA-NAS-MAPS) silicon coated slides: An example of relevant clinical application

Francesco Damin, Silvia Galbiati, Maurizio Ferrari, Marcella Chiari

Research output: Contribution to journalArticle

8 Citations (Scopus)

Abstract

In a previous study we developed a highly sensitive DNA microarray for the detection of common KRAS oncogenic mutations, which has been proven to be highly specific in assigning the correct genotype without any enrichment strategy even in the presence of minority mutated alleles. However, in this approach, the need of a spotter for the deposition of the purified PCR products on the substrates and the purification step of the conventional PCR are serious drawbacks. To overcome these limitations we have introduced the solid-phase polymerase chain reaction (SP-PCR) to form the array of PCR products starting from the oligonucleotide primers. This work was possible thanks to the great thermal stability of the copoly (DMA-NAS-MAPS) coating which withstands PCR thermal cycling temperatures. As an example of the application of this platform we performed the analysis of six common mutations in the codon 12 of KRAS gene (G12A, G12C, G12D, G12R, G12S, and G12V). In conclusion solid-phase PCR, combined with dual-color hybridization, allows mutation analysis in a shorter time span and is more suitable for automation.

Original languageEnglish
Pages (from-to)367-373
Number of pages7
JournalBiosensors and Bioelectronics
Volume78
DOIs
Publication statusPublished - Apr 15 2016

Fingerprint

Silicon
Dynamic mechanical analysis
Microarrays
Oligonucleotide Array Sequence Analysis
DNA
Polymerase Chain Reaction
DNA Primers
Oligonucleotides
Polymerase chain reaction
Thermal cycling
Purification
Thermodynamic stability
Automation
Genes
Color
Coatings
Mutation
Substrates
Hot Temperature
Codon

Keywords

  • DNA microarray
  • Genotyping
  • Polymer coated silicon slide
  • Solid-phase PCR

ASJC Scopus subject areas

  • Biophysics
  • Biomedical Engineering
  • Biotechnology
  • Electrochemistry

Cite this

DNA microarray-based solid-phase PCR on copoly (DMA-NAS-MAPS) silicon coated slides : An example of relevant clinical application. / Damin, Francesco; Galbiati, Silvia; Ferrari, Maurizio; Chiari, Marcella.

In: Biosensors and Bioelectronics, Vol. 78, 15.04.2016, p. 367-373.

Research output: Contribution to journalArticle

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