Evolutionary genetic dissection of human interferons

Jérémy Manry, Guillaume Laval, Etienne Patin, Simona Fornarino, Yuval Itan, Matteo Fumagalli, Manuela Sironi, Magali Tichit, Christiane Bouchier, Jean Laurent Casanova, Luis B. Barreiro, Lluis Quintana-Murci

Research output: Contribution to journalArticle

86 Citations (Scopus)

Abstract

Interferons (IFNs) are cytokines that play a key role in innate and adaptive immune responses. Despite the large number of immunological studies of these molecules, the relative contributions of the numerous IFNs to human survival remain largely unknown. Here, we evaluated the extent to which natural selection has targeted the human IFNs and their receptors, to provide insight into the mechanisms that govern host defense in the natural setting. We found that some IFN-α subtypes, such as IFN-α6, IFN-α8, IFN-α13, and IFN- α14, as well as the type II IFN-γ, have evolved under strong purifying selection, attesting to their essential and nonredundant function in immunity to infection. Conversely, selective constraints have been relaxed for other type I IFNs, particularly for IFN-α10 and IFN-ε, which have accumulated missense or nonsense mutations at high frequencies within the population, suggesting redundancy in host defense. Finally, type III IFNs display geographically restricted signatures of positive selection in European and Asian populations, indicating that genetic variation at these genes has conferred a selective advantage to the host, most likely by increasing resistance to viral infection. Our population genetic analyses show that IFNs differ widely in their biological relevance, and highlight evolutionarily important determinants of host immune responsiveness.

Original languageEnglish
Pages (from-to)2747-2759
Number of pages13
JournalJournal of Experimental Medicine
Volume208
Issue number13
DOIs
Publication statusPublished - Dec 19 2011

Fingerprint

Medical Genetics
Interferons
Dissection
Population Genetics
Interferon Receptors
Interferon Type I
Nonsense Codon
Genetic Selection
Adaptive Immunity
Virus Diseases
Missense Mutation
Innate Immunity
Interferon-gamma
Immunity
Cytokines

ASJC Scopus subject areas

  • Immunology
  • Immunology and Allergy

Cite this

Manry, J., Laval, G., Patin, E., Fornarino, S., Itan, Y., Fumagalli, M., ... Quintana-Murci, L. (2011). Evolutionary genetic dissection of human interferons. Journal of Experimental Medicine, 208(13), 2747-2759. https://doi.org/10.1084/jem.20111680

Evolutionary genetic dissection of human interferons. / Manry, Jérémy; Laval, Guillaume; Patin, Etienne; Fornarino, Simona; Itan, Yuval; Fumagalli, Matteo; Sironi, Manuela; Tichit, Magali; Bouchier, Christiane; Casanova, Jean Laurent; Barreiro, Luis B.; Quintana-Murci, Lluis.

In: Journal of Experimental Medicine, Vol. 208, No. 13, 19.12.2011, p. 2747-2759.

Research output: Contribution to journalArticle

Manry, J, Laval, G, Patin, E, Fornarino, S, Itan, Y, Fumagalli, M, Sironi, M, Tichit, M, Bouchier, C, Casanova, JL, Barreiro, LB & Quintana-Murci, L 2011, 'Evolutionary genetic dissection of human interferons', Journal of Experimental Medicine, vol. 208, no. 13, pp. 2747-2759. https://doi.org/10.1084/jem.20111680
Manry J, Laval G, Patin E, Fornarino S, Itan Y, Fumagalli M et al. Evolutionary genetic dissection of human interferons. Journal of Experimental Medicine. 2011 Dec 19;208(13):2747-2759. https://doi.org/10.1084/jem.20111680
Manry, Jérémy ; Laval, Guillaume ; Patin, Etienne ; Fornarino, Simona ; Itan, Yuval ; Fumagalli, Matteo ; Sironi, Manuela ; Tichit, Magali ; Bouchier, Christiane ; Casanova, Jean Laurent ; Barreiro, Luis B. ; Quintana-Murci, Lluis. / Evolutionary genetic dissection of human interferons. In: Journal of Experimental Medicine. 2011 ; Vol. 208, No. 13. pp. 2747-2759.
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