Gene autoregulation via intronic microRNAs and its functions

Carla Bosia, Matteo Osella, Mariama E. Baroudi, Davide Corà, Michele Caselle

Research output: Contribution to journalArticle

36 Citations (Scopus)

Abstract

Background: MicroRNAs, post-transcriptional repressors of gene expression, play a pivotal role in gene regulatory networks. They are involved in core cellular processes and their dysregulation is associated to a broad range of human diseases. This paper focus on a minimal microRNA-mediated regulatory circuit, in which a protein-coding gene (host gene) is targeted by a microRNA located inside one of its introns.Results: Autoregulation via intronic microRNAs is widespread in the human regulatory network, as confirmed by our bioinformatic analysis, and can perform several regulatory tasks despite its simple topology. Our analysis, based on analytical calculations and simulations, indicates that this circuitry alters the dynamics of the host gene expression, can induce complex responses implementing adaptation and Weber's law, and efficiently filters fluctuations propagating from the upstream network to the host gene. A fine-tuning of the circuit parameters can optimize each of these functions. Interestingly, they are all related to gene expression homeostasis, in agreement with the increasing evidence suggesting a role of microRNA regulation in conferring robustness to biological processes. In addition to model analysis, we present a list of bioinformatically predicted candidate circuits in human for future experimental tests.Conclusions: The results presented here suggest a potentially relevant functional role for negative self-regulation via intronic microRNAs, in particular as a homeostatic control mechanism of gene expression. Moreover, the map of circuit functions in terms of experimentally measurable parameters, resulting from our analysis, can be a useful guideline for possible applications in synthetic biology.

Original languageEnglish
Article number131
JournalBMC Systems Biology
Volume6
DOIs
Publication statusPublished - Oct 10 2012

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MicroRNA
MicroRNAs
Gene expression
Homeostasis
Genes
Gene
Gene Expression
Networks (circuits)
Bioinformatics
Synthetic Biology
Biological Phenomena
Tuning
Gene Regulatory Networks
Regulatory Networks
Gene Regulatory Network
Topology
Model Analysis
Computational Biology
Proteins
Introns

ASJC Scopus subject areas

  • Molecular Biology
  • Structural Biology
  • Applied Mathematics
  • Modelling and Simulation
  • Computer Science Applications

Cite this

Gene autoregulation via intronic microRNAs and its functions. / Bosia, Carla; Osella, Matteo; Baroudi, Mariama E.; Corà, Davide; Caselle, Michele.

In: BMC Systems Biology, Vol. 6, 131, 10.10.2012.

Research output: Contribution to journalArticle

Bosia, Carla ; Osella, Matteo ; Baroudi, Mariama E. ; Corà, Davide ; Caselle, Michele. / Gene autoregulation via intronic microRNAs and its functions. In: BMC Systems Biology. 2012 ; Vol. 6.
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