Gene expression profiles identify inflammatory signatures in dendritic cells

Anna Torri, Ottavio Beretta, Anna Ranghetti, Francesca Granucci, Paola Ricciardi-Castagnoli, Maria Foti

Research output: Contribution to journalArticle

29 Citations (Scopus)

Abstract

Dendritic cells (DCs) constitute a heterogeneous group of antigen-presenting leukocytes important in activation of both innate and adaptive immunity. We studied the gene expression patterns of DCs incubated with reagents inducing their activation or inhibition. Total RNA was isolated from DCs and gene expression profiling was performed with oligonucleotide microarrays. Using a supervised learning algorithm based on Random Forest, we generated a molecular signature of inflammation from a training set of 77 samples. We then validated this molecular signature in a testing set of 38 samples. Supervised analysis identified a set of 44 genes that distinguished very accurately between inflammatory and non inflammatory samples. The diagnostic performance of the signature genes was assessed against an independent set of samples, by qRT-PCR. Our findings suggest that the gene expression signature of DCs can provide a molecular classification for use in the selection of anti-inflammatory or adjuvant molecules with specific effects on DC activity.

Original languageEnglish
Article numbere9404
JournalPLoS One
Volume5
Issue number2
DOIs
Publication statusPublished - Feb 24 2010

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dendritic cells
Transcriptome
Gene expression
Dendritic Cells
gene expression
Genes
Chemical activation
sampling
Supervised learning
Gene Expression Profiling
Adaptive Immunity
Microarrays
HLA Antigens
oligonucleotides
Oligonucleotide Array Sequence Analysis
Innate Immunity
Oligonucleotides
Learning algorithms
adjuvants
leukocytes

ASJC Scopus subject areas

  • Agricultural and Biological Sciences(all)
  • Biochemistry, Genetics and Molecular Biology(all)
  • Medicine(all)

Cite this

Torri, A., Beretta, O., Ranghetti, A., Granucci, F., Ricciardi-Castagnoli, P., & Foti, M. (2010). Gene expression profiles identify inflammatory signatures in dendritic cells. PLoS One, 5(2), [e9404]. https://doi.org/10.1371/journal.pone.0009404

Gene expression profiles identify inflammatory signatures in dendritic cells. / Torri, Anna; Beretta, Ottavio; Ranghetti, Anna; Granucci, Francesca; Ricciardi-Castagnoli, Paola; Foti, Maria.

In: PLoS One, Vol. 5, No. 2, e9404, 24.02.2010.

Research output: Contribution to journalArticle

Torri, A, Beretta, O, Ranghetti, A, Granucci, F, Ricciardi-Castagnoli, P & Foti, M 2010, 'Gene expression profiles identify inflammatory signatures in dendritic cells', PLoS One, vol. 5, no. 2, e9404. https://doi.org/10.1371/journal.pone.0009404
Torri A, Beretta O, Ranghetti A, Granucci F, Ricciardi-Castagnoli P, Foti M. Gene expression profiles identify inflammatory signatures in dendritic cells. PLoS One. 2010 Feb 24;5(2). e9404. https://doi.org/10.1371/journal.pone.0009404
Torri, Anna ; Beretta, Ottavio ; Ranghetti, Anna ; Granucci, Francesca ; Ricciardi-Castagnoli, Paola ; Foti, Maria. / Gene expression profiles identify inflammatory signatures in dendritic cells. In: PLoS One. 2010 ; Vol. 5, No. 2.
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