Genealogy of an ancient protein family

The Sirtuins, a family of disordered members

Susan Costantini, Ankush Sharma, Raffaele Raucci, Maria Costantini, Ida Autiero, Giovanni Colonna

Research output: Contribution to journalArticle

28 Citations (Scopus)

Abstract

Background: Sirtuins genes are widely distributed by evolution and have been found in eubacteria, archaea and eukaryotes. While prokaryotic and archeal species usually have one or two sirtuin homologs, in humans as well as in eukaryotes we found multiple versions and in mammals this family is comprised of seven different homologous proteins being all NAD-dependent de-acylases. 3D structures of human SIRT2, SIRT3, and SIRT5 revealed the overall conformation of the conserved core domain but they were unable to give a structural information about the presence of very flexible and dynamically disordered regions, the role of which is still structurally and functionally unclear. Recently, we modeled the 3D-structure of human SIRT1, the most studied member of this family, that unexpectedly emerged as a member of the intrinsically disordered proteins with its long disordered terminal arms. Despite clear similarities in catalytic cores between the human sirtuins little is known of the general structural characteristics of these proteins. The presence of disorder in human SIRT1 and the propensity of these proteins in promoting molecular interactions make it important to understand the underlying mechanisms of molecular recognition that reasonably should involve terminal segments. The mechanism of recognition, in turn, is a prerequisite for the understanding of any functional activity. Aim of this work is to understand what structural properties are shared among members of this family in humans as well as in other organisms. Results: We have studied the distribution of the structural features of N- and C-terminal segments of sirtuins in all known organisms to draw their evolutionary histories by taking into account average length of terminal segments, amino acid composition, intrinsic disorder, presence of charged stretches, presence of putative phosphorylation sites, flexibility, and GC content of genes. Finally, we have carried out a comprehensive analysis of the putative phosphorylation sites in human sirtuins confirming those sites already known experimentally for human SIRT1 and 2 as well as extending their topology to all the family to get feedback of their physiological functions and cellular localization. Conclusions: Our results highlight that the terminal segments of the majority of sirtuins possess a number of structural features and chemical and physical properties that strongly support their involvement in activities of recognition and interaction with other protein molecules. We also suggest how a multisite phosphorylation provides a possible mechanism by which flexible and intrinsically disordered segments of a sirtuin supported by the presence of positively or negatively charged stretches might enhance the strength and specificity of interaction with a particular molecular partner.

Original languageEnglish
Pages (from-to)60
Number of pages1
JournalBMC Evolutionary Biology
DOIs
Publication statusAccepted/In press - Mar 5 2013

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genealogy
protein
eukaryote
proteins
phosphorylation
gene
eukaryotic cells
topology
chemical property
Eubacteria
mammal
amino acid
physical property
family
organisms
Archaea
amino acid composition
physical properties
history
physicochemical properties

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics

Cite this

Genealogy of an ancient protein family : The Sirtuins, a family of disordered members. / Costantini, Susan; Sharma, Ankush; Raucci, Raffaele; Costantini, Maria; Autiero, Ida; Colonna, Giovanni.

In: BMC Evolutionary Biology, 05.03.2013, p. 60.

Research output: Contribution to journalArticle

Costantini, Susan ; Sharma, Ankush ; Raucci, Raffaele ; Costantini, Maria ; Autiero, Ida ; Colonna, Giovanni. / Genealogy of an ancient protein family : The Sirtuins, a family of disordered members. In: BMC Evolutionary Biology. 2013 ; pp. 60.
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