MetaTropismDB: a database of organ-specific metastasis induced by human cancer cell lines in mouse models

Matteo Giulietti, Marco Bastianoni, Monia Cecati, Annamaria Ruzzo, Massimo Bracci, Marco Malavolta, Francesco Piacenza, Robertina Giacconi, Francesco Piva

Research output: Contribution to journalArticlepeer-review

Abstract

The organotropism is the propensity of metastatic cancer cells to colonize preferably certain distant organs, resulting in a non-random distribution of metastases. In order to shed light on this behaviour, several studies were performed by the injection of human cancer cell lines into immunocompromised mouse models. However, the information about these experiments is spread in the literature. For each xenograft experiment reported in the literature, we annotated both the experimental conditions and outcomes, including details on inoculated human cell lines, mouse models, injection methods, sites of metastasis, organs not colonized, rate of metastasis, latency time, overall survival and the involved genes. We created MetaTropismDB, a freely available database collecting hand-curated data useful to highlight the mechanisms of organ-specific metastasis. Currently, it stores the results of 513 experiments in which injections of 219 human cell lines have been carried out in mouse models. Notably, 296 genes involved in organotropic metastases have been collected. This specialized database allows the researchers to compare the current results about organotropism and plan future experiments in order to identify which tumour molecular signatures establish if and where the metastasis will develop. Database URL:  http://www.introni.it/Metastasis/metastasis.html.

Original languageEnglish
JournalDatabase : the journal of biological databases and curation
Volume2020
DOIs
Publication statusPublished - Nov 25 2020

ASJC Scopus subject areas

  • Information Systems
  • Biochemistry, Genetics and Molecular Biology(all)
  • Agricultural and Biological Sciences(all)

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