Pathway Processor 2.0: A web resource for pathway-based analysis of high-throughput data

Luca Beltrame, Luca Bianco, Paolo Fontana, Duccio Cavalieri

Research output: Contribution to journalArticlepeer-review

Abstract

Pathway Processor 2.0 is a web application designed to analyze high-throughput datasets, including but not limited to microarray and next-generation sequencing, using a pathway centric logic. In addition to well-established methods such as the Fisher's test and impact analysis, Pathway Processor 2.0 offers innovative methods that convert gene expression into pathway expression, leading to the identification of differentially regulated pathways in a dataset of choice.Availability and implementation: Pathway Processor 2.0 is available as a web service at http://compbiotoolbox.fmach.it/ pathwayProcessor/. Sample datasets to test the functionality can be used directly from the application.Contact: Supplementary information: Supplementary data are available at Bioinformatics online.

Original languageEnglish
Pages (from-to)1825-1826
Number of pages2
JournalBioinformatics
Volume29
Issue number14
DOIs
Publication statusPublished - Jul 15 2013

ASJC Scopus subject areas

  • Biochemistry
  • Molecular Biology
  • Computational Theory and Mathematics
  • Computer Science Applications
  • Computational Mathematics
  • Statistics and Probability
  • Medicine(all)

Fingerprint

Dive into the research topics of 'Pathway Processor 2.0: A web resource for pathway-based analysis of high-throughput data'. Together they form a unique fingerprint.

Cite this