SCN- binding to the charged lysines of histone end domains mimics acetylation and shows the major histone-DNA interactions involved in eu and heterochromatin stabilization

Eligio Patrone, Rosella Coradeghini, Paola Barboro, Cristina D'Arrigo, Michele Mormino, Silvio Parodi, Cecilia Balbi

Research output: Contribution to journalArticle

Abstract

SCN- binds to the charged amino group of lysines, inducing local changes in the electrostatic free energy of histones. We exploited this property to selectively perturb the histone-DNA interactions involved in the stabilization of eu and heterochromatin. Differential scanning calorimetry (DSC) was used as leading technique in combination with trypsin digestion that selectively cleaves the histone end domains. Euchromatin undergoes progressive destabilization with increasing KSCN concentration from 0 to 0.3 M. Trypsin digestion in the presence of 0.2 M KSCN show that the stability of the linker decreases as a consequence of the competitive binding of SCN- to the amino groups located in the C and N-terminal domain of H1 and H3, respectively; likewise, the release of the N-terminal domain of H4 induces an appreciable depression in both the temperature and enthalpy of melting of core particle DNA. Unfolding of heterochromatin requires, in addition to further cleavage of H4, extensive digestion of H2A and H2B, strongly suggesting that these histones stabilize the higher order structure by forming a protein network which extends throughout the heterochromatin domain.

Original languageEnglish
Pages (from-to)869-881
Number of pages13
JournalJournal of Cellular Biochemistry
Volume97
Issue number4
DOIs
Publication statusPublished - Mar 1 2006

Fingerprint

Acetylation
Heterochromatin
Histones
Lysine
Stabilization
Digestion
DNA
Trypsin
Euchromatin
Competitive Binding
Differential Scanning Calorimetry
Static Electricity
Freezing
Free energy
Differential scanning calorimetry
Electrostatics
Enthalpy
Melting
Temperature
Proteins

Keywords

  • Chromatin structure
  • Differential scanning calorimetry
  • Eu and heterochromatin stability
  • Histone-DNA interactions

ASJC Scopus subject areas

  • Biochemistry
  • Cell Biology

Cite this

SCN- binding to the charged lysines of histone end domains mimics acetylation and shows the major histone-DNA interactions involved in eu and heterochromatin stabilization. / Patrone, Eligio; Coradeghini, Rosella; Barboro, Paola; D'Arrigo, Cristina; Mormino, Michele; Parodi, Silvio; Balbi, Cecilia.

In: Journal of Cellular Biochemistry, Vol. 97, No. 4, 01.03.2006, p. 869-881.

Research output: Contribution to journalArticle

Patrone, Eligio ; Coradeghini, Rosella ; Barboro, Paola ; D'Arrigo, Cristina ; Mormino, Michele ; Parodi, Silvio ; Balbi, Cecilia. / SCN- binding to the charged lysines of histone end domains mimics acetylation and shows the major histone-DNA interactions involved in eu and heterochromatin stabilization. In: Journal of Cellular Biochemistry. 2006 ; Vol. 97, No. 4. pp. 869-881.
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