Structural Basis for Bivalent Smac-Mimetics Recognition in the IAP Protein Family

Federica Cossu, Mario Milani, Eloise Mastrangelo, Patrice Vachette, Federica Servida, Daniele Lecis, Giulia Canevari, Domenico Delia, Carmelo Drago, Vincenzo Rizzo, Leonardo Manzoni, Pierfausto Seneci, Carlo Scolastico, Martino Bolognesi

Research output: Contribution to journalArticle

Abstract

XIAP is an apoptotic regulator protein that binds to the effector caspases -3 and -7 through its BIR2 domain, and to initiator caspase-9 through its BIR3 domain. Molecular docking studies suggested that Smac-DIABLO may antagonize XIAP by concurrently targeting both BIR2 and BIR3 domains; on this basis bivalent Smac-mimetic compounds have been proposed and characterized. Here, we report the X-ray crystal structure of XIAP-BIR3 domain in complex with a two-headed compound (compound 3) with improved efficacy relative to its monomeric form. A small-angle X-ray scattering study of XIAP-BIR2BIR3, together with fluorescence polarization binding assays and compound 3 cytotoxicity tests on HL60 leukemia cell line are also reported. The crystal structure analysis reveals a network of interactions supporting XIAP-BIR3/compound 3 recognition; moreover, analytical gel-filtration chromatography shows that compound 3 forms a 1:1 stoichiometric complex with a XIAP protein construct containing both BIR2 and BIR3 domains. On the basis of the crystal structure and small-angle X-ray scattering, a model of the same BIR2-BIR3 construct bound to compound 3 is proposed, shedding light on the ability of compound 3 to relieve XIAP inhibitory effects on caspase-9 as well as caspases -3 and -7. A molecular modeling/docking analysis of compound 3 bound to cIAP1-BIR3 domain is presented, considering that Smac-mimetics have been shown to kill tumor cells by inducing cIAP1 and cIAP2 ubiquitination and degradation. Taken together, the results reported here provide a rationale for further development of compound 3 as a lead in the design of dimeric Smac mimetics for cancer treatment.

Original languageEnglish
Pages (from-to)630-644
Number of pages15
JournalJournal of Molecular Biology
Volume392
Issue number3
DOIs
Publication statusPublished - Sep 25 2009

Keywords

  • cIAP
  • inhibition of apoptosis
  • pro-apoptotic drugs
  • Smac-DIABLO
  • XIAP

ASJC Scopus subject areas

  • Molecular Biology

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    Cossu, F., Milani, M., Mastrangelo, E., Vachette, P., Servida, F., Lecis, D., Canevari, G., Delia, D., Drago, C., Rizzo, V., Manzoni, L., Seneci, P., Scolastico, C., & Bolognesi, M. (2009). Structural Basis for Bivalent Smac-Mimetics Recognition in the IAP Protein Family. Journal of Molecular Biology, 392(3), 630-644. https://doi.org/10.1016/j.jmb.2009.04.033