Tractography reproducibility challenge with empirical data (TraCED): The 2017 ISMRM diffusion study group challenge

Vishwesh Nath, Kurt G Schilling, Prasanna Parvathaneni, Yuankai Huo, Justin A Blaber, Allison E Hainline, Muhamed Barakovic, David Romascano, Jonathan Rafael-Patino, Matteo Frigo, Gabriel Girard, Jean-Philippe Thiran, Alessandro Daducci, Matt Rowe, Paulo Rodrigues, Vesna Prčkovska, Dogu B Aydogan, Wei Sun, Yonggang Shi, William A ParkerAbdol A Ould Ismail, Ragini Verma, Ryan P Cabeen, Arthur W Toga, Allen T Newton, Jakob Wasserthal, Peter Neher, Klaus Maier-Hein, Giovanni Savini, Fulvia Palesi, Enrico Kaden, Ye Wu, Jianzhong He, Yuanjing Feng, Michael Paquette, Francois Rheault, Jasmeen Sidhu, Catherine Lebel, Alexander Leemans, Maxime Descoteaux, Tim B Dyrby, Hakmook Kang, Bennett A Landman

Research output: Contribution to journalArticle

Abstract

BACKGROUND: Fiber tracking with diffusion-weighted MRI has become an essential tool for estimating in vivo brain white matter architecture. Fiber tracking results are sensitive to the choice of processing method and tracking criteria.

PURPOSE: To assess the variability for an algorithm in group studies reproducibility is of critical context. However, reproducibility does not assess the validity of the brain connections. Phantom studies provide concrete quantitative comparisons of methods relative to absolute ground truths, yet do no capture variabilities because of in vivo physiological factors. The ISMRM 2017 TraCED challenge was created to fulfill the gap.

STUDY TYPE: A systematic review of algorithms and tract reproducibility studies.

SUBJECTS: Single healthy volunteers.

FIELD STRENGTH/SEQUENCE: 3.0T, two different scanners by the same manufacturer. The multishell acquisition included b-values of 1000, 2000, and 3000 s/mm2 with 20, 45, and 64 diffusion gradient directions per shell, respectively.

ASSESSMENT: Nine international groups submitted 46 tractography algorithm entries each consisting 16 tracts per scan. The algorithms were assessed using intraclass correlation (ICC) and the Dice similarity measure.

STATISTICAL TESTS: Containment analysis was performed to assess if the submitted algorithms had containment within tracts of larger volume submissions. This also serves the purpose to detect if spurious submissions had been made.

RESULTS: The top five submissions had high ICC and Dice >0.88. Reproducibility was high within the top five submissions when assessed across sessions or across scanners: 0.87-0.97. Containment analysis shows that the top five submissions are contained within larger volume submissions. From the total of 16 tracts as an outcome relatively the number of tracts with high, moderate, and low reproducibility were 8, 4, and 4.

DATA CONCLUSION: The different methods clearly result in fundamentally different tract structures at the more conservative specificity choices. Data and challenge infrastructure remain available for continued analysis and provide a platform for comparison.

LEVEL OF EVIDENCE: 5 Technical Efficacy Stage: 1 J. Magn. Reson. Imaging 2019.

Original languageEnglish
Pages (from-to)234-249
Number of pages16
JournalJournal of Magnetic Resonance Imaging
Volume51
Issue number(1)
Early online dateJun 9 2019
DOIs
Publication statusPublished - 2019

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    Nath, V., Schilling, K. G., Parvathaneni, P., Huo, Y., Blaber, J. A., Hainline, A. E., Barakovic, M., Romascano, D., Rafael-Patino, J., Frigo, M., Girard, G., Thiran, J-P., Daducci, A., Rowe, M., Rodrigues, P., Prčkovska, V., Aydogan, D. B., Sun, W., Shi, Y., ... Landman, B. A. (2019). Tractography reproducibility challenge with empirical data (TraCED): The 2017 ISMRM diffusion study group challenge. Journal of Magnetic Resonance Imaging, 51((1)), 234-249 . https://doi.org/10.1002/jmri.26794